User Help Pages
  • Welcome to the Help Pages for UCSC Xena
  • Tutorials and webinars
    • Webinars
    • Basic Tutorial: Section 1
    • Basic Tutorial: Section 2
    • Basic Tutorial: Section 3
    • Advanced Tutorial: Section 1
    • Advanced Tutorial: Section 2
    • Tutorial: Tumor vs Normal
    • Tutorial: Viewing your own data
    • Live examples
  • How do I ...
    • How do I make a KM plot?
    • How do I compare tumor vs normal expression?
    • How do I remove null data (gray lines) from view?
    • How do I make subgroups?
    • How do I make more than 2 subgroups?
    • How do I make subgroups with geneA high and geneB high?
    • How do I compare gene expression between subgroups?
    • How do I compare gene expression between different cancer types?
    • How do I remove duplicate samples from a KM plot?
    • How do I view multiple types of cancer together?
    • How do I filter to just one cancer type
    • How do I view my data with the data from TCGA?
    • How do I change the color of a column?
    • How do I interact with the tooltip?
    • How do I cite UCSC Xena?
  • Overview of features
    • Visual Spreadsheet
      • Coloring for Mutation Columns
      • Coloring for Segmented Copy Number Columns
    • Kaplan Meier Plots
    • Chart & Statistics View
    • Filtering and subgrouping
      • Supported search terms for finding samples
    • Differential Gene Expression
    • GSEA
    • Genomic Signatures
    • Bookmarks
    • Download Data
    • Xena Single Cell
    • TumorMap
    • MuPIT
    • Accessing data through python
    • Transcript View
    • Xena Gene Set Viewer
  • Overview of public data
    • Types of data we have
    • TCGA
    • GDC
    • More studies
    • Choosing a study/cohort
  • FAQ
    • Xena Browser
    • Data and datasets
  • Viewing your own data
    • Getting Started
    • Probes/transcripts/identifiers we recognize
    • Data format specifications and supported biological data types
    • KM plots using data from a Local Xena Hub
    • Hubs for institutions, collaborations, labs, and larger projects
    • Loading data from the command line
    • FAQ/Troubleshooting Guide
  • Technical documentation
    • Setting up Xena for your institution
    • Deep Linking Into Xena
    • Metadata Specification
  • Contact us
  • Cite us
  • Data Use Agreement
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On this page
  • Upcoming Webinars
  • Basic Step-by-Step Tutorial
  • Advanced Step-by-Step Tutorial
  • Video Tutorials
  • Overview of Xena (2 min)
  • Beginner Tutorial (17 min)
  • Advanced Tutorial (55 min)
  • Workshop Cheatsheet/Handout
  • How do I ...
  • Request a workshop

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Tutorials and webinars

Step-by-step tutorials to get you started and our schedule of upcoming webinars

Last updated 22 days ago

Was this helpful?

Video Tutorials

Overview of Xena (2 min)

Beginner Tutorial (17 min)

Advanced Tutorial (55 min)

Recording of tutorial given for NCI in May 2021. Includes closed captioning.

Workshop Cheatsheet/Handout

How do I ...

Request a workshop

are useful if you have a specific question.

Workshops are a great way to teach a group of people how to use Xena. They can be 1-hour, 1/2-day, or 1-day in length. Currently we are only giving workshops remotely via Zoom or a similar technology. We give workshops both within the USA and internationally. Please contact us for more information:

https://cbiit.webex.com/cbiit/lsr.php?RCID=acf4ea46dd9e41338662f0ba1ac59754
How do I ... guides
genome-cancer@soe.ucsc.edu
Upcoming Webinars
Basic Step-by-Step Tutorial
Advanced Step-by-Step Tutorial
328KB
Xena_Workshop_handout.pdf
pdf