> For the complete documentation index, see [llms.txt](https://ucsc-xena.gitbook.io/project/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://ucsc-xena.gitbook.io/project/overview-of-features.md).

# Overview of features

- [Visual Spreadsheet](https://ucsc-xena.gitbook.io/project/overview-of-features/visual-spreadsheet.md): This dynamic, powerful, and flexible view is our default view into the data.
- [Coloring for Mutation Columns](https://ucsc-xena.gitbook.io/project/overview-of-features/visual-spreadsheet/mutation-columns.md): More information about how we color mutation columns
- [Coloring for Segmented Copy Number Columns](https://ucsc-xena.gitbook.io/project/overview-of-features/visual-spreadsheet/coloring-for-segmented-copy-number-columns.md)
- [Kaplan Meier Plots](https://ucsc-xena.gitbook.io/project/overview-of-features/kaplan-meier-plots.md)
- [Chart & Statistics View](https://ucsc-xena.gitbook.io/project/overview-of-features/chart-view.md)
- [Filtering and subgrouping](https://ucsc-xena.gitbook.io/project/overview-of-features/filter-and-subgrouping.md): How to find samples that you want to remove or keep in the view. How to make subgroups.
- [Supported search terms for finding samples](https://ucsc-xena.gitbook.io/project/overview-of-features/filter-and-subgrouping/supported-search-terms-for-finding-samples.md)
- [Differential Gene Expression](https://ucsc-xena.gitbook.io/project/overview-of-features/differential-gene-expression.md): Run a genome-wide differential gene expression analysis to compare groups of samples
- [GSEA](https://ucsc-xena.gitbook.io/project/overview-of-features/gsea.md): Run a genome-wide differential GSEA analysis to compare groups of samples
- [Genomic Signatures](https://ucsc-xena.gitbook.io/project/overview-of-features/genomic-signatures.md): Enter a genomic signature over a set of genes for a particular dataset
- [Bookmarks](https://ucsc-xena.gitbook.io/project/overview-of-features/bookmarks.md): Bookmarks are a great way to save a particular view in Xena, either for yourself or to share with others.
- [Download Data](https://ucsc-xena.gitbook.io/project/overview-of-features/download-data.md): There are 4 ways to download data
- [Xena Single Cell](https://ucsc-xena.gitbook.io/project/overview-of-features/xena-single-cell.md): Overview of how to view single cell data
- [TumorMap](https://ucsc-xena.gitbook.io/project/overview-of-features/tumormap.md): A tool developed by the Stuart Lab to view samples in a 2D layout
- [MuPIT](https://ucsc-xena.gitbook.io/project/overview-of-features/untitled.md): A 3D protein viewer developed by Rachel Karchin's lab
- [Accessing data through python](https://ucsc-xena.gitbook.io/project/overview-of-features/accessing-data-through-python.md)
- [Transcript View](https://ucsc-xena.gitbook.io/project/overview-of-features/transcript-view.md)
- [Xena Gene Set Viewer](https://ucsc-xena.gitbook.io/project/overview-of-features/gene-sets-about.md)