How do I view my data with the data from TCGA?
If you are adding in new samples, this will require you to combine outside of Xena and then load. If you are adding new data on samples we already have, then simply load the data into a Xena Hub.

Adding in new samples

We apologize but we don't provide a simple way to do this because of the batch effects that would be present when combining most data across studies. You will need to download the data you wish to combine from TCGA, combine it yourself either in Microsoft Excel or some other program, and then load it into your own Xena hub.
You can download the TCGA data through our data pages: https://xenabrowser.net/datapages/

Adding in more data on TCGA patient's samples, such as new subtype calls

Load your data into your own Xena hub and select the cohort that you want to view your data side-by-side with. Note that you will need to match the sample names to those that are already in Xena.
Note that if you want to view a genomic signature on our gene expression data, you can do so using our genomic signature feature.
Last modified 1mo ago