Probes/transcripts/identifiers we recognize
We will automatically detect and map your probes/transcripts/identifiers to HUGO gene names. For instance, we will map Affy probe IDs to HUGO gene names so that you can enter a HUGO gene name when creating a column in the Visual Spreadsheet and we will pull up the corresponding Affy probes.
You can still load your data if you do not see your identifiers listed. We will just not map them to HUGO genes for you. This means that in the visualization you will need to enter your identifiers as they appear in your file.
Supported probes and other identifiers
Affy U133 array (hg19) e.g. 1007_s_at
Affy HumanExon1.0ST (hg18) e.g. 2315101
Affy Human Gene 1.0 ST array (hg19) e.g. 7896736
Affy Human SNP6 array (hg18) e.g. CN_473963
Agilent Human gene expression 4X44K array (hg18) e.g. A_23_P100001
Agilent SurePrint G3 Human CGH array 2x400K (hg18) e.g. A_16_P01651995
Agilent Human 1A array (hg18) e.g. A_23_P149050
Exon: GENCODE 19 e.g. ENSE00000327880.1
Infinium HumanMethylation27 array GDC version (hg38) e.g. cg00000292
Infinium HumanMethylation27 array TCGA legacy version (hg18) e.g. cg26211698
Infinium HumanMethylation450 array TCGA legacy version (hg19) e.g. cg13332474
Infinium HumanMethylation450 array GDC version (hg38) e.g. cg00000029
Supported genes and transcripts
HUGO: human gene symbol (hg18) e.g. TP53
HUGO: human gene symbol (hg19) e.g. TP53
HUGO: human gene symbol (hg38) e.g. TP53
Gene: Ensembl human genes (hg19) e.g. ENSG00000223972
Gene: Ensembl human genes (hg38) e.g. ENSG00000223972
Gene: GENCODE 19 e.g. ENSG00000223972.4
Gene: GENCODE 22 comprehensive e.g. ENSG00000223972.5
Gene: GENCODE 23 comprehensive e.g. ENSG00000223972.5
Gene: GENCODE 23 basic e.g. ENSG00000223972.5
Gene: UCSC Known genes (hg18) e.g. uc001aaa.1
Gene: UCSC Known Genes (hg19) e.g. uc001aaa.1
Transcript: GENCODE 19 comprehensive e.g. ENST00000456328.2
Transcript: GENCODE 23 comprehensive e.g. ENST00000456328.2
Transcript: GENCODE 23 basic e.g. ENST00000456328.2
Transcript: RefSeq (hg19) e.g. NM_000014
miRNA miRBase v13 stem-loop (hg18) e.g. hsa-mir-1977
miRNA miRBase v20 stem-loop (hg19) e.g. hsa-mir-1302-2
Contact us if you don't see your gene or probe names in this list and we may be able to add it for you.
FAQ
FAQ: Xena didn't map the right probes
If it looks like we picked the wrong set of probes, please click 'Advanced' next to the 'Import' button on the last screen of the wizard to load data. You can then pick the appropriate probes.
Last updated