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Welcome to the Help Pages for UCSC Xena
Tutorials
How do I ...
How do I make a KM plot?
How do I compare tumor vs normal expression?
How do I remove null data (gray lines) from view?
How do I make subgroups?
How do I make more than 2 subgroups?
How do I make subgroups with geneA high and geneB high?
How do I compare gene expression between subgroups?
How do I compare gene expression between different cancer types?
How do I remove duplicate samples from a KM plot?
How do I view multiple types of cancer together?
How do I filter to just one cancer type
How do I view my data with the data from TCGA?
How do I change the color of a column?
How do I interact with the tooltip?
How do I cite UCSC Xena?
Overview of features
Overview of public data
FAQ
Viewing your own data
Technical documentation
Publication Page
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How do I cite UCSC Xena?

You've run your analysis and are ready to publish your paper - congratulations! Cite the paper below to thank Xena and keep our project funded.
Goldman, M.J., Craft, B., Hastie, M. et al. Visualizing and interpreting cancer genomics data via the Xena platform. Nat Biotechnol (2020). https://doi.org/10.1038/s41587-020-0546-8​
You can also read our paper for free at bioRxiv: https://www.biorxiv.org/content/10.1101/326470v6​
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