User Help Pages
  • Welcome to the Help Pages for UCSC Xena
  • Tutorials and webinars
    • Webinars
    • Basic Tutorial: Section 1
    • Basic Tutorial: Section 2
    • Basic Tutorial: Section 3
    • Advanced Tutorial: Section 1
    • Advanced Tutorial: Section 2
    • Tutorial: Tumor vs Normal
    • Tutorial: Viewing your own data
    • Live examples
  • How do I ...
    • How do I make a KM plot?
    • How do I compare tumor vs normal expression?
    • How do I remove null data (gray lines) from view?
    • How do I make subgroups?
    • How do I make more than 2 subgroups?
    • How do I make subgroups with geneA high and geneB high?
    • How do I compare gene expression between subgroups?
    • How do I compare gene expression between different cancer types?
    • How do I remove duplicate samples from a KM plot?
    • How do I view multiple types of cancer together?
    • How do I filter to just one cancer type
    • How do I view my data with the data from TCGA?
    • How do I change the color of a column?
    • How do I interact with the tooltip?
    • How do I cite UCSC Xena?
  • Overview of features
    • Visual Spreadsheet
      • Coloring for Mutation Columns
      • Coloring for Segmented Copy Number Columns
    • Kaplan Meier Plots
    • Chart & Statistics View
    • Filtering and subgrouping
      • Supported search terms for finding samples
    • Differential Gene Expression
    • GSEA
    • Genomic Signatures
    • Bookmarks
    • Download Data
    • Xena Single Cell
    • TumorMap
    • MuPIT
    • Accessing data through python
    • Transcript View
    • Xena Gene Set Viewer
  • Overview of public data
    • Types of data we have
    • TCGA
    • GDC
    • More studies
    • Choosing a study/cohort
  • FAQ
    • Xena Browser
    • Data and datasets
  • Viewing your own data
    • Getting Started
    • Probes/transcripts/identifiers we recognize
    • Data format specifications and supported biological data types
    • KM plots using data from a Local Xena Hub
    • Hubs for institutions, collaborations, labs, and larger projects
    • Loading data from the command line
    • FAQ/Troubleshooting Guide
  • Technical documentation
    • Setting up Xena for your institution
    • Deep Linking Into Xena
    • Metadata Specification
  • Contact us
  • Cite us
  • Data Use Agreement
Powered by GitBook
On this page
  • Introduction to Xena for bulk sequencing data: June 5th, 2025 10am-12pm PT
  • More webinars coming soon!

Was this helpful?

Export as PDF
  1. Tutorials and webinars

Webinars

Explore upcoming webinars and sign up to stay in the loop on new dates.

Last updated 21 days ago

Was this helpful?

Introduction to Xena for bulk sequencing data: June 5th, 2025 10am-12pm PT

This webinar will be on June 5th, 2025, 10am-12pm PT.

In this webinar we will explore Xena's core functionalities for bulk sequencing data including

  • Visualizing mutation, expression, and copy number variation for a gene, group of genes, or chromosome

  • Visualizing clinical/phenotype data

  • Running a Kaplan-Meier survival analysis

  • Creating charts and analyses with accompanying statistics

  • Running a Differential Gene Expression analysis

All analyses will be done on publicly available data. As time permits, we’ll also do a brief demonstration of how to explore your own bulk sequencing data within Xena.

The webinar will run for 1.5 hours, followed by 30 minutes for Q&A.

Sign up here:

More webinars coming soon!

for updates.

https://ucsc.zoom.us/meeting/register/VnLfFkaPS26Uj22AyVyMfA
Subscribe to our newsletter