User Help Pages
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    • Basic Tutorial: Section 1
    • Basic Tutorial: Section 2
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    • Tutorial: Tumor vs Normal
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  • How do I ...
    • How do I make a KM plot?
    • How do I compare tumor vs normal expression?
    • How do I remove null data (gray lines) from view?
    • How do I make subgroups?
    • How do I make more than 2 subgroups?
    • How do I make subgroups with geneA high and geneB high?
    • How do I compare gene expression between subgroups?
    • How do I compare gene expression between different cancer types?
    • How do I remove duplicate samples from a KM plot?
    • How do I view multiple types of cancer together?
    • How do I filter to just one cancer type
    • How do I view my data with the data from TCGA?
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  • Overview of features
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      • Coloring for Mutation Columns
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    • FAQ/Troubleshooting Guide
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    • Metadata Specification
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On this page
  • Creating a bookmark
  • More information: Bookmark vs. Export/Import
  • Recent Bookmarks
  • FAQ
  • How do I make a bookmark with private data in view?

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  1. Overview of features

Bookmarks

Bookmarks are a great way to save a particular view in Xena, either for yourself or to share with others.

Last updated 3 years ago

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Creating a bookmark

To bookmark a view, click on 'Bookmark' in the top navigation bar. From here you can either click 'Bookmark' to create a bookmark URL or click 'Export' to export a file that can then be imported back to the browser.

When you click 'Bookmark' you will then need to click 'Copy Bookmark' to copy the bookmark URL to your copy buffer. Large views may take a second or two to generate a URL.

Note that your filter and subgroup history, as well as the last Chart View you created, if any, will be saved as part of the bookmark.

Bookmarks are only guaranteed for 3 months

More information: Bookmark vs. Export/Import

The 'Bookmark' option will store all the data in view on our servers and provide you a link. This is the easiest way to share a view. Note that if you have any private data in view, this option will be disabled to preserve your privacy. Please also note that if you lose the link there is no way to get it back.

If you chose Export, it will give you a file with everything Xena needs to recreate your view. You can then save this file and import it back into Xena. While this option can be a bit cumbersome, it will allow you to share private data. Note that these files are still only guaranteed for 3 months, though they may last for longer.

Recent Bookmarks

The 'Recent Bookmarks' option will temporarily show the 15 most recent bookmarks you have created. This can be useful if you're constructing many bookmarks. Note that this menu is frequently reset so do not use this as permanent storage for a bookmark.

FAQ

How do I make a bookmark with private data in view?

When you create a bookmark link, we save the data in view on our servers. To protect user data privacy, we have disabled this option when private data is in view. Please use the Export/Import option instead.