How do I filter to just one cancer type

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For users who wish to use the datasets in a Pan-Can cohort but need to view just one cancer type.

Generalized Steps
1. Add the phenotype column that details the cancer type
The phenotype column will vary depending on which study you choose. See below for specific column names
2. Search for the cancer type you are interested in, making sure that it is listed in the phenotype column. Click the Filter + subgroup menu next to the search bar and select 'Keep Samples'.
​More information on filtering​
For TCGA Pan-Cancer (PANCAN) 
For the TCGA PanCan (PANCAN), you will want to add the phenotype column:
cancer type abbreviation
​Here is a bookmark that will take you to the TCGA PanCan (PANCAN) Study with that phenotype column already selected.
For GDC TCGA PanCan (PANCAN) 
For the GDC TCGA PanCan (PANCAN), you will want to add the phenotype column:
disease_type
​Here is a bookmark that will take you to the GDC TCGA PanCan (PANCAN) Study with that phenotype column already selected.
For TCGA TARGET GTEx
For the TCGA TARGET GTEx, you will want to add the phenotype columns:
main category
study
primary_site
​Here is a bookmark that will take you to the TCGA TARGET GTEx Study with those phenotype columns already selected.
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How do I view multiple types of cancer together?

How do I view my data with the data from TCGA?

Last modified 7mo ago

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Outline

Generalized Steps

For TCGA Pan-Cancer (PANCAN)

For GDC TCGA PanCan (PANCAN)

For TCGA TARGET GTEx