How do I filter to just one cancer type
For users who wish to use the datasets in a Pan-Can cohort but need to view just one cancer type.
1. Add the phenotype column that details the cancer type
The phenotype column will vary depending on which study you choose. See below for specific column names
2. Search for the cancer type you are interested in, making sure that it is listed in the phenotype column. Click the Filter + subgroup menu next to the search bar and select 'Keep Samples'.
For the TCGA PanCan (PANCAN), you will want to add the phenotype column:
cancer type abbreviation
Here is a bookmark that will take you to the TCGA PanCan (PANCAN) Study with that phenotype column already selected.
For the GDC TCGA PanCan (PANCAN), you will want to add the phenotype column:
disease_type
Here is a bookmark that will take you to the GDC TCGA PanCan (PANCAN) Study with that phenotype column already selected.
For the TCGA TARGET GTEx, you will want to add the phenotype columns:
main categorystudyprimary_site
Here is a bookmark that will take you to the TCGA TARGET GTEx Study with those phenotype columns already selected.